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Filtering by: Orcid https://orcid.org/0009-0006-7455-725X Unit (Department) Bioinformatics & Computational Biology

1. A landscape of population-specific variation effects on ligand binding site in the healthy population

Creator:: Sun, Mo
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-04-28
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

2. Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space

Creator:: Xie, Longsheng
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

3. Computational modeling of mRNA degradation in Mycolicibacterium smegmatis

Keyword:: RNase E cleavage, mRNA degradation, Transcript features, RNAseq, Mycolicibacterium smegmatis, and Machine learning
Creator:: Sun, Huaming
Advisor:: Korkin, Dmitry and Shell, Scarlet
Publisher:: Worcester Polytechnic Institute
Date Created:: 2024-05-04
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology

4. Deciphering the Role of Alternative Splicing in Molecular Assemblies: Are Immortalized Cell Lines Good Data Sources?

Keyword:: structure, conservation, alternative splicing, and molecular assembly
Creator:: Bao, Yue
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2024-05-04
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

5. Anchored to the Gene: Sketching topograpHi-C maps of the Genome

Keyword:: bioinformatics, biostatistics, multiomics, Hi-C, and data visualization
Creator:: Tourtellotte, Jocelyn
Advisor:: Korkin, Dmitry and Walcott, Sam
Publisher:: Worcester Polytechnic Institute
Date Created:: 2024-05-05
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology

6. Modeling Approaches to Understanding Bumblebee Behavior and Population Decline

Keyword:: Simulation, Pollinator Decline, Bumblebees, Memory, Deep Learning, and Agent-based model
Creator:: Heath, Kevin
Advisor:: Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-08-12
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology

7. Differential Equations and Data-Driven Methods for Modeling Microglial Cells During Ischemic Stroke

Keyword:: Model Identification, Parameter Estimation, Neuroinflammation, Microglial Cells, and Experimental Data
Creator:: Amato, Sara
Advisor:: Arnold, Andrea N.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2024-04-25
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology

8. Lab vs Soil: The Transcriptome of Pseudomonas putida

Keyword:: Pseudomonas putida, Soil, Synthetic Biology, and Transcriptomics
Creator:: Voltmer, Stokley
Advisor:: Farny, Natalie
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023-12-15
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

9. Passive Brain-Computer Interfaces for Non-Medical Applications

Keyword:: brain-computer interface, education data mining, and non-invasive neuorimaging
Creator:: Howell-Munson, Alicia
Advisor:: Solovey, Erin
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023-04-27
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology

10. Mathematical Modeling and Experimental Approaches Reveal Novel Roles of Cortical Dynein in Spindle Dynamics and Centrosome Clustering

Keyword:: Mitotic Spindle, Model, Mitosis, and Centrosome
Creator:: Mercadante, Dayna
Advisor:: Manning, Amity L. and Olson, Sarah D
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-05-31
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology